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6 Commits
fix/conver
...
feat/fraca
| Author | SHA1 | Date | |
|---|---|---|---|
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eacb638299 | ||
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927c6ac3c5 | ||
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13a429e5c7 | ||
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c87fd37736 | ||
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bb5676ee5a | ||
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a4aa316470 |
@@ -15,8 +15,10 @@
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# See the License for the specific language governing permissions and
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# limitations under the License.
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import contextlib
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import logging
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import shutil
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from concurrent.futures import ThreadPoolExecutor, as_completed
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from pathlib import Path
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import pandas as pd
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@@ -107,6 +109,7 @@ def update_meta_data(
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dst_meta,
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meta_idx,
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data_idx,
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data_file_map,
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videos_idx,
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):
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"""Updates metadata DataFrame with new chunk, file, and timestamp indices.
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@@ -127,8 +130,25 @@ def update_meta_data(
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df["meta/episodes/chunk_index"] = df["meta/episodes/chunk_index"] + meta_idx["chunk"]
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df["meta/episodes/file_index"] = df["meta/episodes/file_index"] + meta_idx["file"]
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df["data/chunk_index"] = df["data/chunk_index"] + data_idx["chunk"]
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df["data/file_index"] = df["data/file_index"] + data_idx["file"]
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# Remap data chunk/file indices per-source-file using the actual destination
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# file chosen during data aggregation. A flat offset is incorrect when
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# multiple source files are concatenated into a single destination file.
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if data_file_map:
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new_data_chunk = []
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new_data_file = []
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for idx in df.index:
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src_chunk = int(df.at[idx, "data/chunk_index"]) # original source file location
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src_file = int(df.at[idx, "data/file_index"]) # original source file location
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dst_chunk, dst_file = data_file_map.get(
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(src_chunk, src_file), (src_chunk + data_idx["chunk"], src_file + data_idx["file"])
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)
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new_data_chunk.append(dst_chunk)
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new_data_file.append(dst_file)
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df["data/chunk_index"] = new_data_chunk
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df["data/file_index"] = new_data_file
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else:
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df["data/chunk_index"] = df["data/chunk_index"] + data_idx["chunk"]
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df["data/file_index"] = df["data/file_index"] + data_idx["file"]
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for key, video_idx in videos_idx.items():
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# Store original video file indices before updating
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orig_chunk_col = f"videos/{key}/chunk_index"
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@@ -166,7 +186,7 @@ def update_meta_data(
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return df
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def aggregate_datasets(
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def _aggregate_datasets(
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repo_ids: list[str],
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aggr_repo_id: str,
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roots: list[Path] | None = None,
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@@ -175,39 +195,24 @@ def aggregate_datasets(
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video_files_size_in_mb: float | None = None,
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chunk_size: int | None = None,
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):
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"""Aggregates multiple LeRobot datasets into a single unified dataset.
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"""Serial aggregation kernel: combines datasets into a destination dataset.
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This is the main function that orchestrates the aggregation process by:
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1. Loading and validating all source dataset metadata
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2. Creating a new destination dataset with unified tasks
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3. Aggregating videos, data, and metadata from all source datasets
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4. Finalizing the aggregated dataset with proper statistics
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Args:
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repo_ids: List of repository IDs for the datasets to aggregate.
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aggr_repo_id: Repository ID for the aggregated output dataset.
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roots: Optional list of root paths for the source datasets.
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aggr_root: Optional root path for the aggregated dataset.
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data_files_size_in_mb: Maximum size for data files in MB (defaults to DEFAULT_DATA_FILE_SIZE_IN_MB)
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video_files_size_in_mb: Maximum size for video files in MB (defaults to DEFAULT_VIDEO_FILE_SIZE_IN_MB)
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chunk_size: Maximum number of files per chunk (defaults to DEFAULT_CHUNK_SIZE)
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This function performs a single-process aggregation. It assumes it is the
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sole writer for its destination `aggr_root`.
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"""
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logging.info("Start aggregate_datasets")
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if data_files_size_in_mb is None:
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data_files_size_in_mb = DEFAULT_DATA_FILE_SIZE_IN_MB
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if video_files_size_in_mb is None:
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video_files_size_in_mb = DEFAULT_VIDEO_FILE_SIZE_IN_MB
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if chunk_size is None:
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chunk_size = DEFAULT_CHUNK_SIZE
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all_metadata = (
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[LeRobotDatasetMetadata(repo_id) for repo_id in repo_ids]
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if roots is None
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else [
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LeRobotDatasetMetadata(repo_id, root=root) for repo_id, root in zip(repo_ids, roots, strict=False)
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# Build metadata objects, supporting a per-dataset "root" that may be None.
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# When root is provided we load from the local filesystem, otherwise from Hub cache.
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if roots is None:
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all_metadata = [LeRobotDatasetMetadata(repo_id) for repo_id in repo_ids]
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else:
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all_metadata = [
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(
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LeRobotDatasetMetadata(repo_id, root=root)
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if root is not None
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else LeRobotDatasetMetadata(repo_id)
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)
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for repo_id, root in zip(repo_ids, roots, strict=False)
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]
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)
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fps, robot_type, features = validate_all_metadata(all_metadata)
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video_keys = [key for key in features if features[key]["dtype"] == "video"]
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@@ -237,9 +242,11 @@ def aggregate_datasets(
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for src_meta in tqdm.tqdm(all_metadata, desc="Copy data and videos"):
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videos_idx = aggregate_videos(src_meta, dst_meta, videos_idx, video_files_size_in_mb, chunk_size)
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data_idx = aggregate_data(src_meta, dst_meta, data_idx, data_files_size_in_mb, chunk_size)
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data_idx, data_file_map = aggregate_data(
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src_meta, dst_meta, data_idx, data_files_size_in_mb, chunk_size
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)
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meta_idx = aggregate_metadata(src_meta, dst_meta, meta_idx, data_idx, videos_idx)
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meta_idx = aggregate_metadata(src_meta, dst_meta, meta_idx, data_idx, data_file_map, videos_idx)
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dst_meta.info["total_episodes"] += src_meta.total_episodes
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dst_meta.info["total_frames"] += src_meta.total_frames
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@@ -248,6 +255,168 @@ def aggregate_datasets(
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logging.info("Aggregation complete.")
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def aggregate_datasets(
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repo_ids: list[str],
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aggr_repo_id: str,
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roots: list[Path] | None = None,
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aggr_root: Path | None = None,
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data_files_size_in_mb: float | None = None,
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video_files_size_in_mb: float | None = None,
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chunk_size: int | None = None,
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num_workers: int | None = None,
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tmp_root: Path | None = None,
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):
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"""Aggregates multiple LeRobot datasets into a single unified dataset.
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This is the main function that orchestrates the aggregation process by:
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1. Loading and validating all source dataset metadata
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2. Creating a new destination dataset with unified tasks
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3. Aggregating videos, data, and metadata from all source datasets
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4. Finalizing the aggregated dataset with proper statistics
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Args:
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repo_ids: List of repository IDs for the datasets to aggregate.
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aggr_repo_id: Repository ID for the aggregated output dataset.
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roots: Optional list of root paths for the source datasets.
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aggr_root: Optional root path for the aggregated dataset.
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data_files_size_in_mb: Maximum size for data files in MB (defaults to DEFAULT_DATA_FILE_SIZE_IN_MB)
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video_files_size_in_mb: Maximum size for video files in MB (defaults to DEFAULT_VIDEO_FILE_SIZE_IN_MB)
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chunk_size: Maximum number of files per chunk (defaults to DEFAULT_CHUNK_SIZE)
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num_workers: When > 1, performs a tree-based parallel reduction using a thread pool
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tmp_root: Optional base directory to store intermediate reduction outputs
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"""
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logging.info("Start aggregate_datasets")
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if data_files_size_in_mb is None:
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data_files_size_in_mb = DEFAULT_DATA_FILE_SIZE_IN_MB
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if video_files_size_in_mb is None:
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video_files_size_in_mb = DEFAULT_VIDEO_FILE_SIZE_IN_MB
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if chunk_size is None:
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chunk_size = DEFAULT_CHUNK_SIZE
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if num_workers is None or num_workers <= 1:
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# Run aggregation sequentially
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_aggregate_datasets(
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repo_ids=repo_ids,
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aggr_repo_id=aggr_repo_id,
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aggr_root=aggr_root,
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roots=roots,
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data_files_size_in_mb=data_files_size_in_mb,
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video_files_size_in_mb=video_files_size_in_mb,
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chunk_size=chunk_size,
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)
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# Uses a parallel fan-out/fan-in strategy when num_workers is provided
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elif num_workers > 1:
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# Validate across all metadata early to fail fast
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all_metadata_for_validation = (
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[LeRobotDatasetMetadata(repo_id) for repo_id in repo_ids]
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if roots is None
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else [
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LeRobotDatasetMetadata(repo_id, root=root)
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for repo_id, root in zip(repo_ids, roots, strict=False)
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]
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)
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validate_all_metadata(all_metadata_for_validation)
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# Clamp workers to a sensible upper bound (pairs per round)
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num_workers = min(num_workers, max(1, len(repo_ids) // 2))
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# Choose a base temporary root for intermediate merge results
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if tmp_root is not None:
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base_tmp_root = tmp_root
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elif aggr_root is not None:
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base_tmp_root = aggr_root.parent / f".{aggr_repo_id}__tmp"
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else:
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base_tmp_root = Path.cwd() / f".{aggr_repo_id}__tmp"
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base_tmp_root.mkdir(parents=True, exist_ok=True)
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current_repo_ids: list[str] = list(repo_ids)
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# Always maintain a roots list aligned with repo_ids. Use None for Hub-backed inputs.
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current_roots: list[Path | None] = list(roots) if roots is not None else [None] * len(repo_ids)
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try:
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level = 0
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while len(current_repo_ids) > 1:
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next_repo_ids: list[str] = []
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next_roots: list[Path | None] = []
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futures = []
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with ThreadPoolExecutor(max_workers=num_workers) as executor:
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group_index = 0
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i = 0
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while i < len(current_repo_ids):
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group_repo_ids = current_repo_ids[i : i + 2]
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group_roots = current_roots[i : i + 2]
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if len(group_repo_ids) == 1:
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# Carry over singleton to next level
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next_repo_ids.append(group_repo_ids[0])
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next_roots.append(group_roots[0])
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i += 1
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continue
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out_repo_id = f"{aggr_repo_id}__reduce_l{level}_g{group_index}"
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out_root = base_tmp_root / f"reduce_l{level}_g{group_index}"
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futures.append(
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executor.submit(
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_aggregate_datasets,
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group_repo_ids,
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out_repo_id,
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group_roots,
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out_root,
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data_files_size_in_mb,
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video_files_size_in_mb,
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chunk_size,
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)
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)
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next_repo_ids.append(out_repo_id)
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next_roots.append(out_root)
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i += 2
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group_index += 1
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for f in as_completed(futures):
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# Bubble up any exception raised inside tasks
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f.result()
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# Cleanup previous level temporary outputs that won't be used again
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base_resolved = base_tmp_root.resolve()
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keep_set = {nr.resolve() for nr in next_roots if nr is not None}
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for prev_root in current_roots:
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if prev_root is None:
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continue
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# Suppress per-iteration to keep cleaning other roots even if one fails
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with contextlib.suppress(Exception):
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pr = prev_root.resolve()
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if pr not in keep_set and base_resolved in pr.parents:
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shutil.rmtree(prev_root, ignore_errors=True)
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current_repo_ids = next_repo_ids
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current_roots = next_roots # aligned list of Path|None after first level
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level += 1
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# Final copy/aggregation into the desired output
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_aggregate_datasets(
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repo_ids=current_repo_ids,
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aggr_repo_id=aggr_repo_id,
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roots=current_roots,
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aggr_root=aggr_root,
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data_files_size_in_mb=data_files_size_in_mb,
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video_files_size_in_mb=video_files_size_in_mb,
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chunk_size=chunk_size,
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)
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finally:
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# Remove all temporary reduction artifacts
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with contextlib.suppress(Exception):
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shutil.rmtree(base_tmp_root, ignore_errors=True)
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logging.info("Aggregation complete.")
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return
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|
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|
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def aggregate_videos(src_meta, dst_meta, videos_idx, video_files_size_in_mb, chunk_size):
|
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"""Aggregates video chunks from a source dataset into the destination dataset.
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|
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@@ -366,6 +535,9 @@ def aggregate_data(src_meta, dst_meta, data_idx, data_files_size_in_mb, chunk_si
|
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|
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unique_chunk_file_ids = sorted(unique_chunk_file_ids)
|
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|
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# Map source (chunk,file) -> destination (chunk,file) actually used during write
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src_to_dst_file: dict[tuple[int, int], tuple[int, int]] = {}
|
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|
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for src_chunk_idx, src_file_idx in unique_chunk_file_ids:
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src_path = src_meta.root / DEFAULT_DATA_PATH.format(
|
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chunk_index=src_chunk_idx, file_index=src_file_idx
|
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@@ -373,7 +545,7 @@ def aggregate_data(src_meta, dst_meta, data_idx, data_files_size_in_mb, chunk_si
|
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df = pd.read_parquet(src_path)
|
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df = update_data_df(df, src_meta, dst_meta)
|
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|
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data_idx = append_or_create_parquet_file(
|
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data_idx, used_chunk, used_file = append_or_create_parquet_file(
|
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df,
|
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src_path,
|
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data_idx,
|
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@@ -383,11 +555,12 @@ def aggregate_data(src_meta, dst_meta, data_idx, data_files_size_in_mb, chunk_si
|
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contains_images=len(dst_meta.image_keys) > 0,
|
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aggr_root=dst_meta.root,
|
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)
|
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src_to_dst_file[(src_chunk_idx, src_file_idx)] = (used_chunk, used_file)
|
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|
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return data_idx
|
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return data_idx, src_to_dst_file
|
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|
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|
||||
def aggregate_metadata(src_meta, dst_meta, meta_idx, data_idx, videos_idx):
|
||||
def aggregate_metadata(src_meta, dst_meta, meta_idx, data_idx, data_file_map, videos_idx):
|
||||
"""Aggregates metadata from a source dataset into the destination dataset.
|
||||
|
||||
Reads source metadata files, updates all indices and timestamps,
|
||||
@@ -421,10 +594,11 @@ def aggregate_metadata(src_meta, dst_meta, meta_idx, data_idx, videos_idx):
|
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dst_meta,
|
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meta_idx,
|
||||
data_idx,
|
||||
data_file_map,
|
||||
videos_idx,
|
||||
)
|
||||
|
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meta_idx = append_or_create_parquet_file(
|
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meta_idx, _m_used_chunk, _m_used_file = append_or_create_parquet_file(
|
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df,
|
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src_path,
|
||||
meta_idx,
|
||||
@@ -478,7 +652,7 @@ def append_or_create_parquet_file(
|
||||
to_parquet_with_hf_images(df, dst_path)
|
||||
else:
|
||||
df.to_parquet(dst_path)
|
||||
return idx
|
||||
return idx, idx["chunk"], idx["file"]
|
||||
|
||||
src_size = get_parquet_file_size_in_mb(src_path)
|
||||
dst_size = get_parquet_file_size_in_mb(dst_path)
|
||||
@@ -489,17 +663,19 @@ def append_or_create_parquet_file(
|
||||
new_path.parent.mkdir(parents=True, exist_ok=True)
|
||||
final_df = df
|
||||
target_path = new_path
|
||||
used_chunk, used_file = idx["chunk"], idx["file"]
|
||||
else:
|
||||
existing_df = pd.read_parquet(dst_path)
|
||||
final_df = pd.concat([existing_df, df], ignore_index=True)
|
||||
target_path = dst_path
|
||||
used_chunk, used_file = idx["chunk"], idx["file"]
|
||||
|
||||
if contains_images:
|
||||
to_parquet_with_hf_images(final_df, target_path)
|
||||
else:
|
||||
final_df.to_parquet(target_path)
|
||||
|
||||
return idx
|
||||
return idx, used_chunk, used_file
|
||||
|
||||
|
||||
def finalize_aggregation(aggr_meta, all_metadata):
|
||||
|
||||
@@ -234,6 +234,7 @@ def merge_datasets(
|
||||
datasets: list[LeRobotDataset],
|
||||
output_repo_id: str,
|
||||
output_dir: str | Path | None = None,
|
||||
num_workers: int | None = None,
|
||||
) -> LeRobotDataset:
|
||||
"""Merge multiple LeRobotDatasets into a single dataset.
|
||||
|
||||
@@ -257,6 +258,7 @@ def merge_datasets(
|
||||
aggr_repo_id=output_repo_id,
|
||||
roots=roots,
|
||||
aggr_root=output_dir,
|
||||
num_workers=num_workers,
|
||||
)
|
||||
|
||||
merged_dataset = LeRobotDataset(
|
||||
@@ -329,7 +331,7 @@ def modify_features(
|
||||
|
||||
if repo_id is None:
|
||||
repo_id = f"{dataset.repo_id}_modified"
|
||||
output_dir = Path(output_dir) if output_dir is not None else HF_LEROBOT_HOME / repo_id
|
||||
output_dir = Path(output_dir, exists_ok=True) if output_dir is not None else HF_LEROBOT_HOME / repo_id
|
||||
|
||||
new_features = dataset.meta.features.copy()
|
||||
|
||||
|
||||
@@ -940,11 +940,26 @@ class LeRobotDataset(torch.utils.data.Dataset):
|
||||
return query_timestamps
|
||||
|
||||
def _query_hf_dataset(self, query_indices: dict[str, list[int]]) -> dict:
|
||||
return {
|
||||
key: torch.stack(self.hf_dataset[q_idx][key])
|
||||
for key, q_idx in query_indices.items()
|
||||
if key not in self.meta.video_keys
|
||||
}
|
||||
"""
|
||||
Query dataset for indices across keys, skipping video keys.
|
||||
|
||||
Tries column-first [key][indices] for speed, falls back to row-first.
|
||||
|
||||
Args:
|
||||
query_indices: Dict mapping keys to index lists to retrieve
|
||||
|
||||
Returns:
|
||||
Dict with stacked tensors of queried data (video keys excluded)
|
||||
"""
|
||||
result: dict = {}
|
||||
for key, q_idx in query_indices.items():
|
||||
if key in self.meta.video_keys:
|
||||
continue
|
||||
try:
|
||||
result[key] = torch.stack(self.hf_dataset[key][q_idx])
|
||||
except (KeyError, TypeError, IndexError):
|
||||
result[key] = torch.stack(self.hf_dataset[q_idx][key])
|
||||
return result
|
||||
|
||||
def _query_videos(self, query_timestamps: dict[str, list[float]], ep_idx: int) -> dict[str, torch.Tensor]:
|
||||
"""Note: When using data workers (e.g. DataLoader with num_workers>0), do not call this function
|
||||
|
||||
@@ -50,9 +50,9 @@ from typing import Any
|
||||
|
||||
import jsonlines
|
||||
import pandas as pd
|
||||
import pyarrow.parquet as pq
|
||||
import pyarrow as pa
|
||||
import tqdm
|
||||
from datasets import Dataset, concatenate_datasets
|
||||
from datasets import Dataset, Features, Image
|
||||
from huggingface_hub import HfApi, snapshot_download
|
||||
from requests import HTTPError
|
||||
|
||||
@@ -68,7 +68,6 @@ from lerobot.datasets.utils import (
|
||||
LEGACY_EPISODES_STATS_PATH,
|
||||
LEGACY_TASKS_PATH,
|
||||
cast_stats_to_numpy,
|
||||
embed_images,
|
||||
flatten_dict,
|
||||
get_file_size_in_mb,
|
||||
get_parquet_file_size_in_mb,
|
||||
@@ -175,33 +174,25 @@ def convert_tasks(root, new_root):
|
||||
write_tasks(df_tasks, new_root)
|
||||
|
||||
|
||||
def concat_data_files(
|
||||
paths_to_cat: list[Path], new_root: Path, chunk_idx: int, file_idx: int, image_keys: list[str]
|
||||
):
|
||||
"""Concatenate multiple parquet data files into a single file.
|
||||
|
||||
Args:
|
||||
paths_to_cat: List of parquet file paths to concatenate
|
||||
new_root: Root directory for the new dataset
|
||||
chunk_idx: Chunk index for the output file
|
||||
file_idx: File index within the chunk
|
||||
image_keys: List of feature keys that contain images
|
||||
"""
|
||||
|
||||
datasets_list: list[Dataset] = [Dataset.from_parquet(str(file)) for file in paths_to_cat]
|
||||
concatenated_ds: Dataset = concatenate_datasets(datasets_list)
|
||||
|
||||
if len(image_keys) > 0:
|
||||
logging.debug(f"Embedding {len(image_keys)} image features for optimal training performance")
|
||||
concatenated_ds = embed_images(concatenated_ds)
|
||||
def concat_data_files(paths_to_cat, new_root, chunk_idx, file_idx, image_keys):
|
||||
# TODO(rcadene): to save RAM use Dataset.from_parquet(file) and concatenate_datasets
|
||||
dataframes = [pd.read_parquet(file) for file in paths_to_cat]
|
||||
# Concatenate all DataFrames along rows
|
||||
concatenated_df = pd.concat(dataframes, ignore_index=True)
|
||||
|
||||
path = new_root / DEFAULT_DATA_PATH.format(chunk_index=chunk_idx, file_index=file_idx)
|
||||
path.parent.mkdir(parents=True, exist_ok=True)
|
||||
|
||||
table = concatenated_ds.with_format("arrow")[:]
|
||||
writer = pq.ParquetWriter(path, schema=table.schema, compression="snappy", use_dictionary=True)
|
||||
writer.write_table(table)
|
||||
writer.close()
|
||||
if len(image_keys) > 0:
|
||||
schema = pa.Schema.from_pandas(concatenated_df)
|
||||
features = Features.from_arrow_schema(schema)
|
||||
for key in image_keys:
|
||||
features[key] = Image()
|
||||
schema = features.arrow_schema
|
||||
else:
|
||||
schema = None
|
||||
|
||||
concatenated_df.to_parquet(path, index=False, schema=schema)
|
||||
|
||||
|
||||
def convert_data(root: Path, new_root: Path, data_file_size_in_mb: int):
|
||||
|
||||
@@ -103,6 +103,7 @@ class SplitConfig:
|
||||
class MergeConfig:
|
||||
type: str = "merge"
|
||||
repo_ids: list[str] | None = None
|
||||
num_workers: int | None = None
|
||||
|
||||
|
||||
@dataclass
|
||||
@@ -215,6 +216,7 @@ def handle_merge(cfg: EditDatasetConfig) -> None:
|
||||
datasets,
|
||||
output_repo_id=cfg.repo_id,
|
||||
output_dir=output_dir,
|
||||
num_workers=cfg.operation.num_workers,
|
||||
)
|
||||
|
||||
logging.info(f"Merged dataset saved to {output_dir}")
|
||||
|
||||
Reference in New Issue
Block a user